Hello,
the organization with subfolders ist a good idea.
But now it would be good if the folders state (e.g expanded)
would be stored in the "tps" config file.
For example have a look at:
http://www.failure.bravehost.com/latex/ ... index.html
It would be good if TeXnicCente would open the next time when
the project is loaded in this state - here an expanded "dox" subtree
Steve