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Any tips on how to amend ? Whatever I do when putting the figures in they do not end up ideal. It has worked for me for the last decade but the last year it caused problems and so far my only solution is to use an old version. Normally I do not care that much as the publisher can fix the formatting ...

After upgrading from (something like) pdfTeX using libpoppler 3.141592-1.40.3-2.2 to something like pdfTeX 3.14159265-2.6-1.40.17 I have sever problems with the placement of figures when using the bioinformatics template ( http://www.ics.uci.edu/~rickl/cs-175/format/tex/bioinfo.cls ). Basically ...